ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5v4oB1 - ECOD Domain | ECOD

ECOD/Domains/e5v4oB1

e5v4oB1

UID: 002068111

PDB

Range: B:36-440
PDB: 5V4O chain B(all domains)
UniProt: Q3JNW6 (all domains)
Gene: katG

Molecule: Catalase-peroxidase

3D Structure

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Related Domains

Browse other domains in peroxidase →

Classification

AArchitecturealpha complex topology(a.10)

XX-groupHeme-dependent peroxidases(136)

HH-groupHeme-dependent peroxidases(136.1)

TT-groupHeme-dependent peroxidases(136.1.1)

FFamilyperoxidase(136.1.1.1)

Ligands

in contact, ≤ 4 Å

FerrohemeHEM
drugDrugBank DB18267
OxygenOXY
drugDrugBank DB09140
Sodium ion

Pfam Families

PF00141peroxidase

Peroxidase

ClanCL0617Peroxidase

External Links

ECOD PDB View: 5V4O RCSB PDB: 5V4O PDBe: 5V4O UniProt: Q3JNW6

Downloads

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metal

+ 2 additives ((4r)-2-Methylpentane-2,4-Diol, Phosphate ion)

(4r)-2-Methylpentane-2,4-DiolMPD
DrugBank DB03564
Phosphate ionPO4
DrugBank DB14523

Shown in the structure viewer. Drug annotations from DrugDomain.