ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5jsdC3 - ECOD Domain | ECOD

ECOD/Domains/e5jsdC3

e5jsdC3

UID: 002070787

PDB

Range: C:81-394
PDB: 5JSD chain C(all domains)
UniProt: A0A159BDB5 (all domains)
Gene: phiAB6_gp40

Molecule: phiAB6 tailspike

3D Structure

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Related Domains

Browse other domains in Pectate_lyase_3 →

Classification

AArchitecturebeta duplicates or obligate multimers(a.4)

XX-groupSingle-stranded right-handed beta-helix(207)

HH-groupPectin lyase-like(207.2)

TT-groupPectin lyase-like(207.2.1)

FFamilyPectate_lyase_3(207.2.1.20)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 1 additive (Acetic acid)

Acetic acidACY
DrugBank DB03166

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF12708Pect-lyase_RHGA_epim

Rhamnogalacturonase A/epimerase, pectate lyase-like

ClanCL0268Pec_lyase-like

External Links

ECOD PDB View: 5JSD RCSB PDB: 5JSD PDBe: 5JSD UniProt: A0A159BDB5

Downloads

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