ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5hkvS2 - ECOD Domain | ECOD

ECOD/Domains/e5hkvS2

e5hkvS2

UID: 002070979

PDB

Range: S:3-97
PDB: 5HKV chain S(all domains)
UniProt: Q2G0S0 (all domains)
Gene: rplY

Molecule: 50S ribosomal protein L25

3D Structure

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Related Domains

Browse other domains in Ribosomal_L25p →

Classification

AArchitecturebeta barrels(a.1)

XX-groupRibosomal protein L25-like(239)

HH-groupRibosomal protein L25-like(239.1)

TT-groupRibosomal protein L25-like(239.1.1)

FFamilyRibosomal_L25p(239.1.1.3)

Ligands

in contact, ≤ 4 Å

Magnesium ionMG
metal
MANGANESE (II) IONMN
metal

+ 1 additive ((4r)-2-Methylpentane-2,4-Diol)

(4r)-2-Methylpentane-2,4-Diol

Pfam Families

PF01386Ribosomal_L25p

Ribosomal L25p family

ClanCL0733Ribosomal_L25

External Links

ECOD PDB View: 5HKV RCSB PDB: 5HKV PDBe: 5HKV UniProt: Q2G0S0

Downloads

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DrugBank DB03564

Shown in the structure viewer. Drug annotations from DrugDomain.