ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5xgyD1 - ECOD Domain | ECOD

ECOD/Domains/e5xgyD1

e5xgyD1

UID: 002071777

PDB

Range: D:1-171
PDB: 5XGY chain D(all domains)
UniProt: Q9GK12 (all domains)
Gene: PGLYRP1

Molecule: Peptidoglycan recognition protein 1

3D Structure

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Related Domains

Browse other domains in Amidase_2 →

Classification

AArchitecturea+b three layers(a.12)

XX-groupN-acetylmuramoyl-L-alanine amidase-like(285)

HH-groupN-acetylmuramoyl-L-alanine amidase-like(285.1)

TT-groupN-acetylmuramoyl-L-alanine amidase-like(285.1.1)

FFamilyAmidase_2(285.1.1.1)

Ligands

in contact, ≤ 4 Å

L-tartaric acidTLA
drugDrugBank DB09459

+ 1 additive (Glycerin)

GlycerinGOL
DrugBank DB09462

Shown in the structure viewer.

Pfam Families

PF01510Amidase_2

N-acetylmuramoyl-L-alanine amidase

External Links

ECOD PDB View: 5XGY RCSB PDB: 5XGY PDBe: 5XGY UniProt: Q9GK12

Downloads

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Drug annotations from DrugDomain.