ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5kk7B1 - ECOD Domain | ECOD

ECOD/Domains/e5kk7B1

e5kk7B1

UID: 002073745

PDB

Range: B:245-699
PDB: 5KK7 chain B(all domains)
UniProt: Q9UKM7 (all domains)
Gene: MAN1B1

Molecule: Endoplasmic reticulum mannosyl-oligosaccharide 1,2-alpha-mannosidase

3D Structure

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Related Domains

Browse other domains in Glyco_hydro_47 →

Classification

AArchitecturealpha superhelices(a.9)

XX-groupRepetitive alpha hairpins(109)

HH-groupalpha/alpha toroid(109.2)

TT-groupalpha/alpha toroid(109.2.1)

FFamilyGlyco_hydro_47(109.2.1.8)

Ligands

in contact, ≤ 4 Å

Calcium ionCA
metal

+ 3 additives (Acetate, 1,4-Butanediol, Sulfate ion)

AcetateACT
DrugBank DB14511
1,4-Butanediol

Pfam Families

PF01532Glyco_hydro_47

Glycosyl hydrolase family 47

ClanCL00596_Hairpin

External Links

ECOD PDB View: 5KK7 RCSB PDB: 5KK7 PDBe: 5KK7 UniProt: Q9UKM7

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB01955

Sulfate ionSO4

DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.