ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5m5kD1 - ECOD Domain | ECOD

ECOD/Domains/e5m5kD1

e5m5kD1

UID: 002073797

PDB

Range: D:6-231,D:392-473
PDB: 5M5K chain D(all domains)
UniProt: A0A087WNH6 (all domains)
Gene: ahcY

Molecule: Adenosylhomocysteinase

3D Structure

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Related Domains

Browse other domains in AdoHcyase →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRossmann-like(2003)

HH-groupRossmann-related(2003.1)

TT-groupFormate/glycerate dehydrogenase catalytic domain-like(2003.1.11)

FFamilyAdoHcyase(2003.1.11.3)

Ligands

in contact, ≤ 4 Å

Cordycepin3AD
drugDrugBank DB12156
NadideNAD
drugDrugBank DB14128

+ 1 additive (Triethylene glycol)

Pfam Families

PF05221AdoHcyase

S-adenosyl-L-homocysteine hydrolase

ClanCL0063NADP_Rossmann

External Links

ECOD PDB View: 5M5K RCSB PDB: 5M5K PDBe: 5M5K UniProt: A0A087WNH6

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Triethylene glycolPGE
DrugBank DB02327

Shown in the structure viewer. Drug annotations from DrugDomain.