ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5hmlA1 - ECOD Domain | ECOD

ECOD/Domains/e5hmlA1

e5hmlA1

UID: 002074812

PDB

Range: A:186-290
PDB: 5HML chain A(all domains)
UniProt: P06229 (all domains)
Gene: D15

Molecule: Exodeoxyribonuclease

3D Structure

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Related Domains

Browse other domains in 5_3_exonuc →

Classification

AArchitecturealpha arrays(a.6)

XX-groupHhH/H2TH(102)

HH-groupSAM/DNA-glycosylase(102.1)

TT-groupSAM domain-like(102.1.1)

FFamily5_3_exonuc(102.1.1.4)

Ligands

in contact, ≤ 4 Å

Chloride ionCL
Magnesium ionMG
metal
Iodide ionIOD
within 5 Å only

+ 1 additive (1,2-ETHANEDIOL)

Pfam Families

PF013675_3_exonuc

5'-3' exonuclease, C-terminal SAM fold

ClanCL04645_3_exonuc_C

External Links

ECOD PDB View: 5HML RCSB PDB: 5HML PDBe: 5HML UniProt: P06229

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

1,2-ETHANEDIOLEDO

Shown in the structure viewer. Drug annotations from DrugDomain.