ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1rkqA2 - ECOD Domain | ECOD

ECOD/Domains/e1rkqA2

e1rkqA2

UID: 002075037

RepresentativePDB

Range: A:88-194
PDB: 1RKQ chain A(all domains)
UniProt: P0A8Y5 (all domains)
Gene: yidA

Molecule: Hypothetical protein yidA

3D Structure

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Related Domains

Browse other domains in Hydrolase_3 →

Classification

AArchitecturea+b two layers(a.11)

XX-groupCof C2 cap domain(3012)

HH-groupCof C2 cap domain(3012.1)

TT-groupCof C2 cap domain(3012.1.1)

FFamilyHydrolase_3(3012.1.1.4)

Ligands

in contact, ≤ 4 Å

Chloride ionCL
Magnesium ionMG
metalwithin 5 Å only

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF08282Hydrolase_3

haloacid dehalogenase-like hydrolase

ClanCL0137HAD

External Links

ECOD PDB View: 1RKQ RCSB PDB: 1RKQ PDBe: 1RKQ UniProt: P0A8Y5

Downloads

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