ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e5junA1 - ECOD Domain | ECOD

ECOD/Domains/e5junA1

e5junA1

UID: 002075135

PDB

Range: A:21-183
PDB: 5JUN chain A(all domains)
UniProt: Q30NP1 (all domains)
Gene: PB2

Molecule: Polymerase basic protein 2

3D Structure

Loading viewer...

Related Domains

Browse other domains in Flu_PB2_5th →

Classification

AArchitecturea+b three layers(a.12)

XX-groupPolymerase basic protein 2 cap-binding domain(3521)

HH-groupPolymerase basic protein 2 cap-binding domain(3521.1)

TT-groupPolymerase basic protein 2 cap-binding domain(3521.1.1)

FFamilyFlu_PB2_5th(3521.1.1.1)

Ligands

in contact, ≤ 4 Å

(3~{R})-3-[[5-fluoranyl-2-(5-fluoranyl-1~{H}-pyrrolo[2,3-b]pyridin-3-yl)pyrimidin-4-yl]amino]-3-(1-methylcyclobutyl)propanoic acid6NU

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF00604Flu_PB2_5th

Influenza RNA polymerase PB2 CAP binding domain

External Links

ECOD PDB View: 5JUN RCSB PDB: 5JUN PDBe: 5JUN UniProt: Q30NP1

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure