ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5n55A1 - ECOD Domain | ECOD

ECOD/Domains/e5n55A1

e5n55A1

UID: 002075282

PDB

Range: A:32-261
PDB: 5N55 chain A(all domains)
UniProt: Q8GKX2 (all domains)
Gene: blaVIM-5

Molecule: Class B metallo-beta-lactamase

3D Structure

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Related Domains

Browse other domains in Lactamase_B →

Classification

AArchitecturea+b four layers(a.13)

XX-groupMetallo-hydrolase/oxidoreductase(247)

HH-groupMetallo-hydrolase/oxidoreductase(247.1)

TT-groupMetallo-hydrolase/oxidoreductase(247.1.1)

FFamilyLactamase_B(247.1.1.1)

Ligands

in contact, ≤ 4 Å

(1-chloro-4-hydroxyisoquinoline-3-carbonyl)-L-tryptophan8NN
Zinc ionZN
metal

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF00753Lactamase_B

Metallo-beta-lactamase superfamily

ClanCL0381Metallo-HOrase

External Links

ECOD PDB View: 5N55 RCSB PDB: 5N55 PDBe: 5N55 UniProt: Q8GKX2

Downloads

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