ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e5vf9A1 - ECOD Domain | ECOD

ECOD/Domains/e5vf9A1

e5vf9A1

UID: 002075488

PDB

Range: A:0-83
PDB: 5VF9 chain A(all domains)
UniProt: P04179 (all domains)
Gene: SOD2

Molecule: Superoxide dismutase [Mn], mitochondrial

3D Structure

Loading viewer...

Related Domains

Browse other domains in Sod_Fe_N →

Classification

AArchitecturealpha bundles(a.7)

XX-groupLong alpha-hairpin(192)

HH-groupFe,Mn superoxide dismutase (SOD), N-terminal domain(192.3)

TT-groupFe,Mn superoxide dismutase (SOD), N-terminal domain(192.3.1)

FFamilySod_Fe_N(192.3.1.1)

Ligands

in contact, ≤ 4 Å

Potassium ionK
metal
MANGANESE (II) IONMN
metal

+ 1 additive (Phosphate ion)

Phosphate ion

Pfam Families

PF00081Sod_Fe_N

Iron/manganese superoxide dismutases, alpha-hairpin domain

External Links

ECOD PDB View: 5VF9 RCSB PDB: 5VF9 PDBe: 5VF9 UniProt: P04179

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB14523

Shown in the structure viewer. Drug annotations from DrugDomain.