ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5x1jC1 - ECOD Domain | ECOD

ECOD/Domains/e5x1jC1

e5x1jC1

UID: 002075563

PDB

Range: C:3-59,C:153-328
PDB: 5X1J chain C(all domains)
UniProt: G2IQS7 (all domains)
Gene: ligM

Molecule: Vanillate/3-O-methylgallate O-demethylase

3D Structure

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Related Domains

Browse other domains in GCV_T →

Classification

AArchitecturea+b two layers(a.11)

XX-groupAlpha-beta plaits(304)

HH-groupAminomethyltransferase folate-binding domain(304.107)

TT-groupAminomethyltransferase folate-binding domain(304.107.1)

FFamilyGCV_T(304.107.1.1)

Ligands

in contact, ≤ 4 Å

Vanillic acidVNL
drugDrugBank DB02130

+ 2 additives (Tromethamine, 1,2-ETHANEDIOL)

TromethamineTRS
DrugBank DB03754within 5 Å only

Pfam Families

GCVT N-terminal domain

ClanCL0289FBD

External Links

ECOD PDB View: 5X1J RCSB PDB: 5X1J PDBe: 5X1J UniProt: G2IQS7

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

1,2-ETHANEDIOLEDO

Shown in the structure viewer. Drug annotations from DrugDomain.