ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3v97B4 - ECOD Domain | ECOD

ECOD/Domains/e3v97B4

e3v97B4

UID: 002076221

PDB

Range: B:170-382
PDB: 3V97 chain B(all domains)
UniProt: P75864 (all domains)
Gene: rlmL

Molecule: Ribosomal RNA large subunit methyltransferase L

3D Structure

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Related Domains

Browse other domains in UPF0020 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRossmann-like(2003)

HH-groupRossmann-related(2003.1)

TT-groupS-adenosyl-L-methionine-dependent methyltransferases(2003.1.5)

FFamilyUPF0020(2003.1.5.5)

Ligands

in contact, ≤ 4 Å

S-adenosyl-l-homocysteineSAH

+ 1 additive (Glycerin)

GlycerinGOL
DrugBank DB09462

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF01170UPF0020

RMKL-like, methyltransferase domain

ClanCL0063NADP_Rossmann

External Links

ECOD PDB View: 3V97 RCSB PDB: 3V97 PDBe: 3V97 UniProt: P75864

Downloads

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