ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5m6mA1 - ECOD Domain | ECOD

ECOD/Domains/e5m6mA1

e5m6mA1

UID: 002077111

PDB

Range: A:249-351
PDB: 5M6M chain A(all domains)
UniProt: P98170 (all domains)
Gene: XIAP

Molecule: E3 ubiquitin-protein ligase XIAP

3D Structure

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Related Domains

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Classification

AArchitecturefew secondary structure elements(a.19)

XX-groupInhibitor of apoptosis (IAP) repeat(381)

HH-groupInhibitor of apoptosis (IAP) repeat(381.1)

TT-groupInhibitor of apoptosis (IAP) repeat(381.1.1)

FFamilyBIR(381.1.1.1)

Ligands

in contact, ≤ 4 Å

1-[[(2~{R},5~{R})-1-[2-[3,3-dimethyl-6-(phenylmethyl)-2~{H}-pyrrolo[3,2-b]pyridin-1-yl]-2-oxidanylidene-ethyl]-5-methyl-piperazin-4-ium-2-yl]methyl]pyrrolidin-2-one7H8
Sodium ionNA
metal
Zinc ionZN

Pfam Families

Inhibitor of Apoptosis domain

ClanCL0417BIR-like

External Links

ECOD PDB View: 5M6M RCSB PDB: 5M6M PDBe: 5M6M UniProt: P98170

Downloads

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metal

Shown in the structure viewer. Drug annotations from DrugDomain.