ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5vmkC1 - ECOD Domain | ECOD

ECOD/Domains/e5vmkC1

e5vmkC1

UID: 002077572

PDB

Range: C:249-450
PDB: 5VMK chain C(all domains)
UniProt: B0VPT6 (all domains)
Gene: glmU

Molecule: Bifunctional protein GlmU

3D Structure

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Related Domains

Browse other domains in Hexapep, GMPPB_C →

Classification

AArchitecturebeta duplicates or obligate multimers(a.4)

XX-groupSingle-stranded left-handed beta-helix(208)

HH-groupTrimeric LpxA-like enzymes(208.1)

TT-groupTrimeric LpxA-like enzymes(208.1.1)

FFamilyHexapep, GMPPB_C(208.1.1.20)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 2 additives (Citric acid, Tetraethylene glycol)

Citric acidCIT
DrugBank DB04272
Tetraethylene glycolPG4

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF00132Hexapep

Bacterial transferase hexapeptide (six repeats)

ClanCL0536HEXAPEP

PF25087GMPPB_C

GMPPB C-terminal domain

ClanCL0536HEXAPEP

External Links

ECOD PDB View: 5VMK RCSB PDB: 5VMK PDBe: 5VMK UniProt: B0VPT6

Downloads

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