ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5aesB1 - ECOD Domain | ECOD

ECOD/Domains/e5aesB1

e5aesB1

UID: 002079456

PDB

Range: B:1-86,B:210-291
PDB: 5AES chain B(all domains)
UniProt: P60487 (all domains)
Gene: Pdxp

Molecule: PYRIDOXAL PHOSPHATE PHOSPHATASE

3D Structure

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Related Domains

Browse other domains in Hydrolase_like,Hydrolase_6 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupHAD domain-like(2006)

HH-groupHAD domain-related(2006.1)

TT-groupHAD-like(2006.1.1)

FFamilyHydrolase_like,Hydrolase_6(2006.1.1.16)

Ligands

in contact, ≤ 4 Å

{2-[5-hydroxy-4-(hydroxymethyl)-6-methylpyridin-3-yl]ethyl}phosphonic acid5B0
Magnesium ionMG
metal

+ 1 additive (Glycerin)

Glycerin

Pfam Families

PF13242Hydrolase_like

HAD-hyrolase-like

ClanCL0137HAD

PF13344Hydrolase_6

Haloacid dehalogenase-like hydrolase

ClanCL0137HAD

External Links

ECOD PDB View: 5AES RCSB PDB: 5AES PDBe: 5AES UniProt: P60487

Downloads

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DrugBank DB09462

Shown in the structure viewer. Drug annotations from DrugDomain.