ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3pdwA1 - ECOD Domain | ECOD

ECOD/Domains/e3pdwA1

e3pdwA1

UID: 002079690

PDB

Range: A:4-73,A:183-258
PDB: 3PDW chain A(all domains)
UniProt: O32125 (all domains)
Gene: yutF

Molecule: Uncharacterized hydrolase yutF

3D Structure

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Related Domains

Browse other domains in Hydrolase_like,Hydrolase_6 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupHAD domain-like(2006)

HH-groupHAD domain-related(2006.1)

TT-groupHAD-like(2006.1.1)

FFamilyHydrolase_like,Hydrolase_6(2006.1.1.16)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 2 additives (Acetic acid, Glycerin)

Acetic acidACY
DrugBank DB03166
GlycerinGOL
DrugBank DB09462

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF13242Hydrolase_like

HAD-hyrolase-like

ClanCL0137HAD

PF13344Hydrolase_6

Haloacid dehalogenase-like hydrolase

ClanCL0137HAD

External Links

ECOD PDB View: 3PDW RCSB PDB: 3PDW PDBe: 3PDW UniProt: O32125

Downloads

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