ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5k87B2 - ECOD Domain | ECOD

ECOD/Domains/e5k87B2

e5k87B2

UID: 002080284

PDB

Range: B:186-397
PDB: 5K87 chain B(all domains)
UniProt: Q8EJW4 (all domains)
Gene: prpF

Molecule: 2-methyl-aconitate isomerase

3D Structure

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Related Domains

Browse other domains in PrpF →

Classification

AArchitecturea+b complex topology(a.14)

XX-groupDiaminopimelate epimerase-like(286)

HH-groupDiaminopimelate epimerase-like(286.1)

TT-groupDiaminopimelate epimerase-like(286.1.1)

FFamilyPrpF(286.1.1.3)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 1 additive (Malonate Ion)

Malonate IonMLI
DrugBank DB02201

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PrpF protein

ClanCL0288DAP_epimerase

External Links

ECOD PDB View: 5K87 RCSB PDB: 5K87 PDBe: 5K87 UniProt: Q8EJW4

Downloads

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