ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5no4Z2 - ECOD Domain | ECOD

ECOD/Domains/e5no4Z2

e5no4Z2

UID: 002080460

PDB

Range: Z:105-346
PDB: 5NO4 chain Z(all domains)
UniProt: P39286 (all domains)
Gene: rsgA

Molecule: Small ribosomal subunit biogenesis GTPase RsgA

3D Structure

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Related Domains

Browse other domains in MMR_HSR1, RsgA_GTPase →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupP-loop domains-like(2004)

HH-groupP-loop domains-related(2004.1)

TT-groupP-loop containing nucleoside triphosphate hydrolases(2004.1.1)

FFamilyMMR_HSR1, RsgA_GTPase(2004.1.1.422)

Ligands

in contact, ≤ 4 Å

Phosphoaminophosphonic acid guanylate esterGNP
drugDrugBank DB02082
Magnesium ionMG
metal
Zinc ion

Pfam Families

PF01926MMR_HSR1

50S ribosome-binding GTPase

ClanCL0023P-loop_NTPase

PF03193RsgA_GTPase

RsgA GTPase

ClanCL0023P-loop_NTPase

External Links

ECOD PDB View: 5NO4 RCSB PDB: 5NO4 PDBe: 5NO4 UniProt: P39286

Downloads

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metal

Shown in the structure viewer. Drug annotations from DrugDomain.