ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5u8zD1 - ECOD Domain | ECOD

ECOD/Domains/e5u8zD1

e5u8zD1

UID: 002080555

PDB

Range: D:30-526
PDB: 5U8Z chain D(all domains)
UniProt: Q7S860 (all domains)
Gene: cao-1

Molecule: Carotenoid oxygenase 1

3D Structure

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Related Domains

Browse other domains in RPE65 →

Classification

AArchitecturebeta duplicates or obligate multimers(a.4)

XX-groupbeta-propeller-like(5)

HH-groupbeta-propeller(5.1)

TT-group7-bladed(5.1.4)

FFamilyRPE65(5.1.4.15)

Ligands

in contact, ≤ 4 Å

5-[(Z)-2-fluoro-2-(4-hydroxyphenyl)ethenyl]benzene-1,3-diol83D
Chloride ionCL
FE (II) IONFE2

Pfam Families

Retinal pigment epithelial membrane protein

ClanCL0186Beta_propeller

External Links

ECOD PDB View: 5U8Z RCSB PDB: 5U8Z PDBe: 5U8Z UniProt: Q7S860

Downloads

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metal

+ 1 additive (Dimethyl sulfoxide)

Dimethyl sulfoxideDMS
DrugBank DB01093

Shown in the structure viewer. Drug annotations from DrugDomain.