ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5vgjG2 - ECOD Domain | ECOD

ECOD/Domains/e5vgjG2

e5vgjG2

UID: 002080703

PDB

Range: G:128-194
PDB: 5VGJ chain G(all domains)
UniProt: Q5G5U5 (all domains)
Gene: env

Molecule: 1FD6-V1V2-WITO

3D Structure

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Related Domains

Browse other domains in GP120 →

Classification

AArchitecturebeta barrels(a.1)

XX-groupV1/V2 domain in HIV gp120(6173)

HH-groupV1/V2 domain in HIV gp120(6173.1)

TT-groupV1/V2 domain in HIV gp120(6173.1.1)

FFamilyGP120(6173.1.1.1)

Ligands

in contact, ≤ 4 Å

N-AcetylglucosamineNAG
drugDrugBank DB00141

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

Envelope glycoprotein GP120

External Links

ECOD PDB View: 5VGJ RCSB PDB: 5VGJ PDBe: 5VGJ UniProt: Q5G5U5

Downloads

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