ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5vk2A1 - ECOD Domain | ECOD

ECOD/Domains/e5vk2A1

e5vk2A1

UID: 002080710

PDB

Range: A:59-255
PDB: 5VK2 chain A(all domains)
UniProt: P08669 (all domains)
Gene: GPC

Molecule: Pre-glycoprotein polyprotein GP complex

3D Structure

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Related Domains

Browse other domains in Arena_glycoprot →

Classification

AArchitecturea+b complex topology(a.14)

XX-groupEnvelope glycoprotein GP1(3081)

HH-groupEnvelope glycoprotein GP1(3081.1)

TT-groupEnvelope glycoprotein GP1(3081.1.1)

FFamilyArena_glycoprot(3081.1.1.1)

Ligands

in contact, ≤ 4 Å

N-AcetylglucosamineNAG
drugDrugBank DB00141

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF00798Arena_glycoprot

Arenavirus glycoprotein

External Links

ECOD PDB View: 5VK2 RCSB PDB: 5VK2 PDBe: 5VK2 UniProt: P08669

Downloads

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