ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5vwmA1 - ECOD Domain | ECOD

ECOD/Domains/e5vwmA1

e5vwmA1

UID: 002081494

PDB

Range: A:1-299
PDB: 5VWM chain A(all domains)
UniProt: P47205 (all domains)
Gene: lpxC

Molecule: UDP-3-O-acyl-N-acetylglucosamine deacetylase

3D Structure

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Related Domains

Browse other domains in LpxC →

Classification

AArchitecturea+b two layers(a.11)

XX-groupRibosomal protein S5 domain 2-like(212)

HH-groupRibosomal protein S5 domain 2-like(212.1)

TT-groupRibosomal protein S5 domain 2-like(212.1.1)

FFamilyLpxC(212.1.1.15)

Ligands

in contact, ≤ 4 Å

N-{(1S,2R)-2-hydroxy-1-[(hydroxyamino)carbonyl]propyl}-4-{[4-(morpholin-4-ylmethyl)phenyl]ethynyl}benzamideC90
drugDrugBank DB07536
Calcium ionCA
metal

Pfam Families

UDP-3-O-acyl N-acetylglycosamine deacetylase

ClanCL0329S5

External Links

ECOD PDB View: 5VWM RCSB PDB: 5VWM PDBe: 5VWM UniProt: P47205

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Chloride ion

Zinc ionZN

metal

+ 1 additive (1,2-ETHANEDIOL)

1,2-ETHANEDIOLEDO

Shown in the structure viewer. Drug annotations from DrugDomain.