ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5x8fA1 - ECOD Domain | ECOD

ECOD/Domains/e5x8fA1

e5x8fA1

UID: 002081536

PDB

Range: A:129-304
PDB: 5X8F chain A(all domains)
UniProt: P23971 (all domains)
Gene: menE

Molecule: 2-succinylbenzoate--CoA ligase

3D Structure

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Related Domains

Browse other domains in AMP-binding →

Classification

AArchitecturea+b complex topology(a.14)

XX-groupCoA-dependent acyltransferases(323)

HH-groupCoA-dependent acyltransferases(323.1)

TT-groupCoA-dependent acyltransferases(323.1.1)

FFamilyAMP-binding(323.1.1.3)

Ligands

in contact, ≤ 4 Å

Adenosine phosphateAMP
drugDrugBank DB00131
Calcium ionCA
metal
Magnesium ion

Pfam Families

PF00501AMP-binding

AMP-binding enzyme

ClanCL0378ANL

External Links

ECOD PDB View: 5X8F RCSB PDB: 5X8F PDBe: 5X8F UniProt: P23971

Downloads

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metal

o-succinylbenzoyl-N-coenzyme AS0N

Shown in the structure viewer. Drug annotations from DrugDomain.