ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5x8fC1 - ECOD Domain | ECOD

ECOD/Domains/e5x8fC1

e5x8fC1

UID: 002081544

PDB

Range: C:384-486
PDB: 5X8F chain C(all domains)
UniProt: P23971 (all domains)
Gene: menE

Molecule: 2-succinylbenzoate--CoA ligase

3D Structure

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Related Domains

Browse other domains in AMP-binding_C →

Classification

AArchitecturea+b two layers(a.11)

XX-groupAlpha-lytic protease prodomain-like(327)

HH-groupa+b domain in acetyl-CoA synthetase-like proteins(327.5)

TT-groupa+b domain in acetyl-CoA synthetase-like proteins(327.5.1)

FFamilyAMP-binding_C(327.5.1.2)

Ligands

in contact, ≤ 4 Å

Adenosine phosphateAMP
drugDrugBank DB00131
Magnesium ionMG
metal
Sodium ion

Pfam Families

PF13193AMP-binding_C

AMP-binding enzyme C-terminal domain

ClanCL0531AMP-binding_C

External Links

ECOD PDB View: 5X8F RCSB PDB: 5X8F PDBe: 5X8F UniProt: P23971

Downloads

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metal

o-succinylbenzoyl-N-coenzyme AS0N

Shown in the structure viewer. Drug annotations from DrugDomain.