ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5l6hC6 - ECOD Domain | ECOD

ECOD/Domains/e5l6hC6

e5l6hC6

UID: 002082826

PDB

Range: C:406-593,C:863-913
PDB: 5L6H chain C(all domains)
UniProt: P22515 (all domains)
Gene: UBA1

Molecule: Ubiquitin-activating enzyme E1 1

3D Structure

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Related Domains

Browse other domains in ThiF →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRossmann-like(2003)

HH-groupRossmann-related(2003.1)

TT-groupActivating enzymes of the ubiquitin-like proteins(2003.1.9)

FFamilyThiF(2003.1.9.1)

Ligands

in contact, ≤ 4 Å

[(2~{R},3~{S},4~{R},5~{R})-5-[6-[(3-ethynylphenyl)amino]purin-9-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methyl sulfamate6O2
Chloride ionCL

+ 2 additives (Sulfate ion, Glycerol)

Sulfate ionSO4

Pfam Families

ThiF family

ClanCL0063NADP_Rossmann

External Links

ECOD PDB View: 5L6H RCSB PDB: 5L6H PDBe: 5L6H UniProt: P22515

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB14546

GlycerolGOL

Shown in the structure viewer. Drug annotations from DrugDomain.