ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5l6jC2 - ECOD Domain | ECOD

ECOD/Domains/e5l6jC2

e5l6jC2

UID: 002082852

PDB

Range: C:11-174,C:261-284,C:357-405
PDB: 5L6J chain C(all domains)
UniProt: P22515 (all domains)
Gene: UBA1

Molecule: Ubiquitin-activating enzyme E1 1

3D Structure

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Related Domains

Browse other domains in ThiF, E1_4HB →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRossmann-like(2003)

HH-groupRossmann-related(2003.1)

TT-groupActivating enzymes of the ubiquitin-like proteins(2003.1.9)

FFamilyThiF, E1_4HB(2003.1.9.8)

Ligands

in contact, ≤ 4 Å

Chloride ionCL

+ 2 additives (Glycerin, Sulfate ion)

GlycerinGOL
DrugBank DB09462
Sulfate ionSO4

Pfam Families

ThiF family

ClanCL0063NADP_Rossmann

Ubiquitin-activating enzyme E1 four-helix bundle

External Links

ECOD PDB View: 5L6J RCSB PDB: 5L6J PDBe: 5L6J UniProt: P22515

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.