ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5xh6A1 - ECOD Domain | ECOD

ECOD/Domains/e5xh6A1

e5xh6A1

UID: 002083565

PDB

Range: A:886-1072,A:1259-1307
PDB: 5XH6 chain A(all domains)
UniProt: U2UMQ6 (all domains)
Gene: cas12a

Molecule: CRISPR-associated endonuclease Cpf1

3D Structure

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Related Domains

Browse other domains in RuvC_1 →

Classification

AArchitecturemixed a+b and a/b(a.18)

XX-groupRibonuclease H-like(2484)

HH-groupRibonuclease H-like(2484.1)

TT-groupRibonuclease H-like(2484.1.1)

FFamilyRuvC_1(2484.1.1.84)

Ligands

in contact, ≤ 4 Å

Chloride ionCL

+ 1 additive (1,2-ETHANEDIOL)

1,2-ETHANEDIOLEDO

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

RuvC nuclease domain

ClanCL0219RNase_H

External Links

ECOD PDB View: 5XH6 RCSB PDB: 5XH6 PDBe: 5XH6 UniProt: U2UMQ6

Downloads

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