ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5vviB2 - ECOD Domain | ECOD

ECOD/Domains/e5vviB2

e5vviB2

UID: 002088014

PDB

Range: B:162-260
PDB: 5VVI chain B(all domains)
UniProt: P0A4T4 (all domains)
Gene: occR

Molecule: Octopine catabolism/uptake operon regulatory protein OccR

3D Structure

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Related Domains

Browse other domains in LysR_substrate →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupPeriplasmic binding protein-like II(7523)

HH-groupPeriplasmic binding protein-like II(7523.1)

TT-groupPeriplasmic binding protein-like II(7523.1.1)

FFamilyLysR_substrate(7523.1.1.15)

Ligands

in contact, ≤ 4 Å

octopine6DB
Chloride ionCL

+ 2 additives (Acetic acid, 1,2-ETHANEDIOL)

Acetic acidACY

Pfam Families

PF03466LysR_substrate

LysR substrate binding domain

ClanCL0177PBP

External Links

ECOD PDB View: 5VVI RCSB PDB: 5VVI PDBe: 5VVI UniProt: P0A4T4

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB03166

1,2-ETHANEDIOLEDO

Shown in the structure viewer. Drug annotations from DrugDomain.