ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5w0nA3 - ECOD Domain | ECOD

ECOD/Domains/e5w0nA3

e5w0nA3

UID: 002088119

RepresentativePDB

Range: A:1340-1363
PDB: 5W0N chain A(all domains)
UniProt: Q5VYS8 (all domains)
Gene: TUT7

Molecule: Terminal uridylyltransferase 7

3D Structure

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Related Domains

Browse other domains in zf-CCHC →

Classification

AArchitecturefew secondary structure elements(a.19)

XX-groupCCHC-type 1 zinc finger(396)

HH-groupRetrovirus zinc finger-related domains(396.1)

TT-groupRetrovirus zinc finger-related domains(396.1.1)

FFamilyzf-CCHC(396.1.1.1)

Ligands

in contact, ≤ 4 Å

Iodide ionIOD
[(2R,3S,4R,5R)-5-(2,4-DIOXO-3,4-DIHYDROPYRIMIDIN-1(2H)-YL)-3,4-DIHYDROXYTETRAHYDROFURAN-2-YL]METHYL (2R,3S,4R,5R)-5-(2,4-DIOXO-3,4-DIHYDROPYRIMIDIN-1(2H)-YL)-4-HYDROXY-2-(HYDROXYMETHYL)TETRAHYDROFURAN-3-YL HYDROGEN (S)-PHOSPHATEUPU
Zinc ionZN

Pfam Families

PF00098zf-CCHC

Zinc knuckle

ClanCL0511Retroviral_zf

External Links

ECOD PDB View: 5W0N RCSB PDB: 5W0N PDBe: 5W0N UniProt: Q5VYS8

Downloads

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metal

Shown in the structure viewer. Drug annotations from DrugDomain.