ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5twsA2 - ECOD Domain | ECOD

ECOD/Domains/e5twsA2

e5twsA2

UID: 002088533

PDB

Range: A:289-364,A:385-494
PDB: 5TWS chain A(all domains)
UniProt: Q9NP87 (all domains)
Gene: POLM

Molecule: human DNA Polymerase Mu

3D Structure

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Related Domains

Browse other domains in DNA_pol_B_thumb,DNA_pol_B_palm →

Classification

AArchitecturea+b three layers(a.12)

XX-groupNucleotidyltransferase-like(316)

HH-groupNucleotidyltransferase(316.1)

TT-groupNucleotidyltransferase(316.1.1)

FFamilyDNA_pol_B_thumb,DNA_pol_B_palm(316.1.1.24)

Ligands

in contact, ≤ 4 Å

Glycolic acidGOA
drugDrugBank DB03085
Chloride ionCL
Magnesium ionMG

Pfam Families

PF14791DNA_pol_B_thumb

DNA polymerase beta thumb

PF14792DNA_pol_B_palm

DNA polymerase beta palm

ClanCL0260NTP_transf

External Links

ECOD PDB View: 5TWS RCSB PDB: 5TWS PDBe: 5TWS UniProt: Q9NP87

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

metal

Sodium ionNA

metal

+ 2 additives (HEPES, 1,2-ETHANEDIOL)

HEPESEPE
DrugBank DB16872
1,2-ETHANEDIOLEDO

Shown in the structure viewer. Drug annotations from DrugDomain.