ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5x22M1 - ECOD Domain | ECOD

ECOD/Domains/e5x22M1

e5x22M1

UID: 002088928

PDB

Range: M:660-700,M:827-999
PDB: 5X22 chain M(all domains)
UniProt: Q8RQE9 (all domains)
Gene: rpoB

Molecule: DNA-directed RNA polymerase subunit beta

3D Structure

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Related Domains

Browse other domains in RNA_pol_Rpb2_6 →

Classification

AArchitecturebeta barrels(a.1)

XX-groupcradle loop barrel(1)

HH-groupRIFT-related(1.1)

TT-groupdouble psi(1.1.2)

FFamilyRNA_pol_Rpb2_6(1.1.2.1)

Ligands

in contact, ≤ 4 Å

5'-O-[(S)-hydroxy{[(S)-hydroxy(phosphonooxy)phosphoryl]methyl}phosphoryl]cytidine2TM
Magnesium ionMG
metal

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF00562RNA_pol_Rpb2_6

RNA polymerase Rpb2, domain 6

ClanCL0410LEF-8-like

External Links

ECOD PDB View: 5X22 RCSB PDB: 5X22 PDBe: 5X22 UniProt: Q8RQE9

Downloads

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