ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1qdnB1 - ECOD Domain | ECOD

ECOD/Domains/e1qdnB1

e1qdnB1

UID: 000020922

PDB

Range: B:1-85
PDB: 1QDN chain B(all domains)
UniProt: P18708 (all domains)
Gene: NSF

Molecule: PROTEIN (N-ETHYLMALEIMIDE SENSITIVE FUSION PROTEIN (NSF))

3D Structure

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Related Domains

Browse other domains in CDC48_N →

Classification

AArchitecturebeta barrels(a.1)

XX-groupcradle loop barrel(1)

HH-groupRIFT-related(1.1)

TT-groupdouble psi(1.1.2)

FFamilyCDC48_N(1.1.2.7)

Ligands

in contact, ≤ 4 Å

MercaptoethanolBME
drugDrugBank DB03345

+ 1 additive (Sulfate ion)

Sulfate ionSO4
DrugBank DB14546

Shown in the structure viewer.

Pfam Families

PF02359CDC48_N

Cell division protein 48 (CDC48), N-terminal domain

ClanCL0199DPBB

External Links

ECOD PDB View: 1QDN RCSB PDB: 1QDN PDBe: 1QDN UniProt: P18708

Downloads

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Drug annotations from DrugDomain.