ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5m4qB1 - ECOD Domain | ECOD

ECOD/Domains/e5m4qB1

e5m4qB1

UID: 002092840

PDB

Range: B:6-187
PDB: 5M4Q chain B(all domains)
UniProt: P12955 (all domains)
Gene: PEPD

Molecule: Xaa-Pro dipeptidase

3D Structure

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Related Domains

Browse other domains in AMP_N →

Classification

AArchitecturemixed a+b and a/b(a.18)

XX-groupRibonuclease H-like(2484)

HH-groupCreatinase/prolidase N-terminal domain(2484.3)

TT-groupCreatinase/prolidase N-terminal domain(2484.3.1)

FFamilyAMP_N(2484.3.1.2)

Ligands

in contact, ≤ 4 Å

ProlinePRO
drugDrugBank DB00172

+ 1 additive (Glycerol)

GlycerolGOL

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

Aminopeptidase P, N-terminal domain

ClanCL0356AMP_N-like

External Links

ECOD PDB View: 5M4Q RCSB PDB: 5M4Q PDBe: 5M4Q UniProt: P12955

Downloads

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