ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5mmyA1 - ECOD Domain | ECOD

ECOD/Domains/e5mmyA1

e5mmyA1

UID: 002092930

PDB

Range: A:62-159
PDB: 5MMY chain A(all domains)
UniProt: P14489 (all domains)
Gene: OXA-10

Molecule: Beta-lactamase OXA-10

3D Structure

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Related Domains

Browse other domains in Transpeptidase →

Classification

AArchitecturealpha complex topology(a.10)

XX-groupalpha-helical domain in beta-lactamase/transpeptidase-like proteins(4019)

HH-groupalpha-helical domain in beta-lactamase/transpeptidase-like proteins(4019.1)

TT-groupalpha-helical domain in beta-lactamase/transpeptidase-like proteins(4019.1.1)

FFamilyTranspeptidase(4019.1.1.3)

Ligands

in contact, ≤ 4 Å

Chloride ionCL

+ 4 additives (Dimethyl sulfoxide, HEPES, 1,2-ETHANEDIOL, …)

Dimethyl sulfoxideDMS
DrugBank DB01093
HEPESEPE

Pfam Families

PF00905Transpeptidase

Penicillin binding protein transpeptidase domain

ClanCL0013Beta-lactamase

External Links

ECOD PDB View: 5MMY RCSB PDB: 5MMY PDBe: 5MMY UniProt: P14489

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB16872

1,2-ETHANEDIOLEDO

GlycerolGOL

Shown in the structure viewer. Drug annotations from DrugDomain.