ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5npkB1 - ECOD Domain | ECOD

ECOD/Domains/e5npkB1

e5npkB1

UID: 002092977

PDB

Range: B:1144-1327
PDB: 5NPK chain B(all domains)
UniProt: Q99XG5 (all domains)
Gene: gyrA

Molecule: DNA gyrase subunit B,DNA gyrase subunit B,DNA gyrase subunit A

3D Structure

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Related Domains

Browse other domains in DNA_topoisoIV →

Classification

AArchitecturea+b two layers(a.11)

XX-groupa+b domain in type II DNA topoisomerase(4014)

HH-groupa+b domain in type II DNA topoisomerase(4014.1)

TT-groupa+b domain in type II DNA topoisomerase(4014.1.1)

FFamilyDNA_topoisoIV(4014.1.1.1)

Ligands

in contact, ≤ 4 Å

~{N}-[(1~{R})-2-azanyl-1-phenyl-ethyl]-4-(1~{H}-pyrrolo[2,3-b]pyridin-3-yl)thiophene-2-carboxamide94H

+ 1 additive (Glycerin)

GlycerinGOL
DrugBank DB09462

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF00521DNA_topoisoIV

DNA gyrase/topoisomerase IV, subunit A

External Links

ECOD PDB View: 5NPK RCSB PDB: 5NPK PDBe: 5NPK UniProt: Q99XG5

Downloads

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