ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5npkd3 - ECOD Domain | ECOD

ECOD/Domains/e5npkd3

e5npkd3

UID: 002092991

PDB

Range: d:1328-1491
PDB: 5NPK chain d(all domains)
UniProt: Q99XG5 (all domains)
Gene: gyrA

Molecule: DNA gyrase subunit B,DNA gyrase subunit B,DNA gyrase subunit A

3D Structure

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Related Domains

Browse other domains in DNA_topoisoIV →

Classification

AArchitecturealpha bundles(a.7)

XX-groupalpha-helical domain in type II DNA topoisomerase(4016)

HH-groupalpha-helical domain in type II DNA topoisomerase(4016.1)

TT-groupalpha-helical domain in type II DNA topoisomerase(4016.1.1)

FFamilyDNA_topoisoIV(4016.1.1.1)

Ligands

in contact, ≤ 4 Å

~{N}-[(1~{R})-2-azanyl-1-phenyl-ethyl]-4-(1~{H}-pyrrolo[2,3-b]pyridin-3-yl)thiophene-2-carboxamide94H
MANGANESE (II) IONMN
metal

+ 1 additive (Sulfate ion)

Sulfate ion

Pfam Families

PF00521DNA_topoisoIV

DNA gyrase/topoisomerase IV, subunit A

External Links

ECOD PDB View: 5NPK RCSB PDB: 5NPK PDBe: 5NPK UniProt: Q99XG5

Downloads

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DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.