ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e5vsdB1 - ECOD Domain | ECOD

ECOD/Domains/e5vsdB1

e5vsdB1

UID: 002093259

PDB

Range: B:1006-1057,B:1124-1266
PDB: 5VSD chain B(all domains)
UniProt: Q9H9B1 (all domains)
Gene: EHMT1

Molecule: Histone-lysine N-methyltransferase EHMT1

3D Structure

Loading viewer...

Related Domains

Browse other domains in SET →

Classification

AArchitecturebeta barrels(a.1)

XX-groupbeta-clip(70)

HH-groupSET domain-like(70.3)

TT-groupSET domain-like(70.3.1)

FFamilySET(70.3.1.1)

Ligands

in contact, ≤ 4 Å

AdemetionineSAM
drugDrugBank DB00118
6,7-dimethoxy-N~2~-methyl-N~4~-(1-methylpiperidin-4-yl)-N~2~-propylquinazoline-2,4-diamine9HJ
Zinc ionZN

Pfam Families

SET domain

ClanCL0489SAF

External Links

ECOD PDB View: 5VSD RCSB PDB: 5VSD PDBe: 5VSD UniProt: Q9H9B1

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

metal

+ 1 additive (Glycerin)

GlycerinGOL
DrugBank DB09462

Shown in the structure viewer. Drug annotations from DrugDomain.