ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5vyqB1 - ECOD Domain | ECOD

ECOD/Domains/e5vyqB1

e5vyqB1

UID: 002093309

PDB

Range: B:3-175
PDB: 5VYQ chain B(all domains)
UniProt: R4MIX2 (all domains)
Gene: J113_23825

Molecule: Uncharacterized protein

3D Structure

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Related Domains

Browse other domains in Formyl_trans_N →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupFormyltransferase(7571)

HH-groupFormyltransferase(7571.1)

TT-groupFormyltransferase(7571.1.1)

FFamilyFormyl_trans_N(7571.1.1.1)

Ligands

in contact, ≤ 4 Å

Thymidine-5'- DiphosphateTYD
drugDrugBank DB03103
Chloride ionCL
Potassium ionK

Pfam Families

PF00551Formyl_trans_N

Formyl transferase

External Links

ECOD PDB View: 5VYQ RCSB PDB: 5VYQ PDBe: 5VYQ UniProt: R4MIX2

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

metal

Sodium ionNA

metal

+ 1 additive (1,2-ETHANEDIOL)

1,2-ETHANEDIOLEDO

Shown in the structure viewer. Drug annotations from DrugDomain.