ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5xdqF1 - ECOD Domain | ECOD

ECOD/Domains/e5xdqF1

e5xdqF1

UID: 002093372

PDB

Range: F:1-94
PDB: 5XDQ chain F(all domains)
UniProt: P00428 (all domains)
Gene: COX5B

Molecule: Cytochrome c oxidase subunit 5B, mitochondrial

3D Structure

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Related Domains

Browse other domains in COX5B →

Classification

AArchitecturefew secondary structure elements(a.19)

XX-groupRubredoxin-like(375)

HH-groupRubredoxin-related(375.1)

TT-groupCytochrome c oxidase Subunit F(375.1.8)

FFamilyCOX5B(375.1.8.1)

Ligands

in contact, ≤ 4 Å

(1S)-2-{[(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(STEAROYLOXY)METHYL]ETHYL (5E,8E,11E,14E)-ICOSA-5,8,11,14-TETRAENOATEPEK
Zinc ionZN
metal

+ 1 additive (1,2-ETHANEDIOL)

1,2-ETHANEDIOL

Pfam Families

Cytochrome c oxidase subunit Vb

ClanCL0167Zn_Beta_Ribbon

External Links

ECOD PDB View: 5XDQ RCSB PDB: 5XDQ PDBe: 5XDQ UniProt: P00428

Downloads

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Shown in the structure viewer. Drug annotations from DrugDomain.