ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5o4nC1 - ECOD Domain | ECOD

ECOD/Domains/e5o4nC1

e5o4nC1

UID: 002093877

PDB

Range: C:2-260
PDB: 5O4N chain C(all domains)
UniProt: Q6LX54 (all domains)
Gene: MMP1498

Molecule: HcgC

3D Structure

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Related Domains

Browse other domains in HcgC →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRossmann-like(2003)

HH-groupRossmann-related(2003.1)

TT-groupNAD(P)-binding Rossmann-fold domains(2003.1.1)

FFamilyHcgC(2003.1.1.54)

Ligands

in contact, ≤ 4 Å

S-adenosyl-L-homocysteineSAH
drugDrugBank DB01752
6-carboxy methyl-4-hydroxy-2-pyridinol9KH

+ 2 additives (Dimethyl sulfoxide, (4r)-2-Methylpentane-2,4-Diol)

Dimethyl sulfoxide

Pfam Families

FeGP cofactor biosynthesis protein, methyltransferase HcgC

ClanCL0063NADP_Rossmann

External Links

ECOD PDB View: 5O4N RCSB PDB: 5O4N PDBe: 5O4N UniProt: Q6LX54

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB01093

(4r)-2-Methylpentane-2,4-DiolMPD

DrugBank DB03564

Shown in the structure viewer. Drug annotations from DrugDomain.