ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5n2cA1 - ECOD Domain | ECOD

ECOD/Domains/e5n2cA1

e5n2cA1

UID: 002095674

PDB

Range: A:52-170
PDB: 5N2C chain A(all domains)
UniProt: B4EDC1 (all domains)
Gene: pal

Molecule: Putative OmpA family lipoprotein

3D Structure

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Related Domains

Browse other domains in OmpA →

Classification

AArchitecturea+b three layers(a.12)

XX-groupBacillus chorismate mutase-like(301)

HH-groupOmpA-like(301.3)

TT-groupOmpA-like(301.3.1)

FFamilyOmpA(301.3.1.1)

Ligands

in contact, ≤ 4 Å

3-(cyclohexylamino)propanesulfonic acidCXS
drugDrugBank DB02219

+ 3 additives (Acetate, 1,2-ETHANEDIOL, Oxalate ion)

AcetateACT
DrugBank DB14511

Pfam Families

OmpA family

External Links

ECOD PDB View: 5N2C RCSB PDB: 5N2C PDBe: 5N2C UniProt: B4EDC1

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

1,2-ETHANEDIOLEDO

Oxalate ionOXL

Shown in the structure viewer. Drug annotations from DrugDomain.