ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5n6yD2 - ECOD Domain | ECOD

ECOD/Domains/e5n6yD2

e5n6yD2

UID: 002095686

PDB

Range: D:314-450
PDB: 5N6Y chain D(all domains)
UniProt: P16855 (all domains)
Gene: vnfD

Molecule: Nitrogenase vanadium-iron protein alpha chain

3D Structure

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Related Domains

Browse other domains in Oxidored_nitro →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupFlavodoxin-like(2007)

HH-groupClass I glutamine amidotransferase-like(2007.1)

TT-groupChelatase-like(2007.1.14)

FFamilyOxidored_nitro(2007.1.14.1)

Ligands

in contact, ≤ 4 Å

C Fe7 S8 V8P8
3-HYDROXY-3-CARBOXY-ADIPIC ACIDHCA
Magnesium ionMG

Pfam Families

PF00148Oxidored_nitro

Nitrogenase component 1 type Oxidoreductase

ClanCL0043Chelatase

External Links

ECOD PDB View: 5N6Y RCSB PDB: 5N6Y PDBe: 5N6Y UniProt: P16855

Downloads

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metal

within 5 Å only

+ 1 additive (Carbonate ion)

Carbonate ionCO3
DrugBank DB14531

Shown in the structure viewer. Drug annotations from DrugDomain.