ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5n6yB2 - ECOD Domain | ECOD

ECOD/Domains/e5n6yB2

e5n6yB2

UID: 002095689

PDB

Range: B:12-176
PDB: 5N6Y chain B(all domains)
UniProt: P16856 (all domains)
Gene: vnfK

Molecule: Nitrogenase vanadium-iron protein beta chain

3D Structure

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Related Domains

Browse other domains in Oxidored_nitro →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupFlavodoxin-like(2007)

HH-groupClass I glutamine amidotransferase-like(2007.1)

TT-groupChelatase-like(2007.1.14)

FFamilyOxidored_nitro(2007.1.14.1)

Ligands

in contact, ≤ 4 Å

3-HYDROXY-3-CARBOXY-ADIPIC ACIDHCA
FE(8)-S(7) CLUSTERCLF
within 5 Å only

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF00148Oxidored_nitro

Nitrogenase component 1 type Oxidoreductase

ClanCL0043Chelatase

External Links

ECOD PDB View: 5N6Y RCSB PDB: 5N6Y PDBe: 5N6Y UniProt: P16856

Downloads

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