ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5vnrA1 - ECOD Domain | ECOD

ECOD/Domains/e5vnrA1

e5vnrA1

UID: 002095976

PDB

Range: A:1-164
PDB: 5VNR chain A(all domains)
UniProt: P00720 (all domains)
Gene: E

Molecule: Endolysin

3D Structure

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Related Domains

Browse other domains in Phage_lysozyme →

Classification

AArchitecturea+b complex topology(a.14)

XX-groupLysozyme-like(235)

HH-groupLysozyme-like(235.1)

TT-groupLysozyme-like(235.1.1)

FFamilyPhage_lysozyme(235.1.1.6)

Ligands

in contact, ≤ 4 Å

2-Hydroxyethyl DisulfideHED
drugDrugBank DB02486
Chloride ionCL
Sodium ionNA
metal

Pfam Families

PF00959Phage_lysozyme

Phage lysozyme

ClanCL0037Lysozyme

External Links

ECOD PDB View: 5VNR RCSB PDB: 5VNR PDBe: 5VNR UniProt: P00720

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

+ 2 additives (Glycerin, Phosphate ion)

GlycerinGOL
DrugBank DB09462
Phosphate ionPO4
DrugBank DB14523

Shown in the structure viewer. Drug annotations from DrugDomain.