ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5mogD2 - ECOD Domain | ECOD

ECOD/Domains/e5mogD2

e5mogD2

UID: 002096948

PDB

Range: D:102-399,D:507-571
PDB: 5MOG chain D(all domains)
UniProt: A2XDA1 (all domains)
Gene: PDS1

Molecule: Phytoene dehydrogenase, chloroplastic/chromoplastic

3D Structure

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Related Domains

Browse other domains in Flavin containing amine oxidoreductase / NAD(P)-binding Rossmann-like domain →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRossmann-like(2003)

HH-groupRossmann-related(2003.1)

TT-groupFAD/NAD(P)-binding domain(2003.1.2)

FFamilyFlavin containing amine oxidoreductase / NAD(P)-binding Rossmann-like domain(2003.1.2.18)

Ligands

in contact, ≤ 4 Å

Flavin adenine dinucleotideFAD
drugDrugBank DB03147
NorflurazonNRF

+ 3 additives (HEPES, Imidazole, Tromethamine)

HEPES

Pfam Families

PF01593Amino_oxidase

Flavin containing amine oxidoreductase

ClanCL0063NADP_Rossmann

PF13450NAD_binding_8

NAD(P)-binding Rossmann-like domain

ClanCL0063NADP_Rossmann

External Links

ECOD PDB View: 5MOG RCSB PDB: 5MOG PDBe: 5MOG UniProt: A2XDA1

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB16872

ImidazoleIMD

DrugBank DB03366

TromethamineTRS

DrugBank DB03754

Shown in the structure viewer. Drug annotations from DrugDomain.