ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5l0zA1 - ECOD Domain | ECOD

ECOD/Domains/e5l0zA1

e5l0zA1

UID: 002097595

PDB

Range: A:124-284
PDB: 5L0Z chain A(all domains)
UniProt: Q92SJ4 (all domains)
Gene: SMc01130

Molecule: Probable RNA methyltransferase, TrmH family

3D Structure

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Related Domains

Browse other domains in SpoU_methylase →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupalpha/beta knot(2488)

HH-groupalpha/beta knot(2488.1)

TT-groupalpha/beta knot(2488.1.1)

FFamilySpoU_methylase(2488.1.1.1)

Ligands

in contact, ≤ 4 Å

AdemetionineSAM
drugDrugBank DB00118
COBALT (II) IONCO
metalwithin 5 Å only

+ 1 additive (Sulfate ion)

Pfam Families

PF00588SpoU_methylase

SpoU rRNA Methylase family

ClanCL0098SPOUT

External Links

ECOD PDB View: 5L0Z RCSB PDB: 5L0Z PDBe: 5L0Z UniProt: Q92SJ4

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Sulfate ionSO4

DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.