ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5liqB1 - ECOD Domain | ECOD

ECOD/Domains/e5liqB1

e5liqB1

UID: 002097676

PDB

Range: B:129-300
PDB: 5LIQ chain B(all domains)
UniProt: Q8GCA3 (all domains)

Molecule: Nicking endonuclease N.BspD6I

3D Structure

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Related Domains

Browse other domains in RE_AlwI →

Classification

AArchitecturealpha arrays(a.6)

XX-groupHTH(101)

HH-groupHTH(101.1)

TT-groupwinged helix domain(101.1.2)

FFamilyRE_AlwI(101.1.2.114)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 2 additives (Glycerin, Phosphate ion)

GlycerinGOL
DrugBank DB09462
Phosphate ionPO4
DrugBank DB14523

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF09491RE_AlwI

AlwI restriction endonuclease

ClanCL0236PDDEXK

External Links

ECOD PDB View: 5LIQ RCSB PDB: 5LIQ PDBe: 5LIQ UniProt: Q8GCA3

Downloads

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