ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5mmbA2 - ECOD Domain | ECOD

ECOD/Domains/e5mmbA2

e5mmbA2

UID: 002097713

PDB

Range: A:313-375
PDB: 5MMB chain A(all domains)
UniProt: P14350 (all domains)
Gene: pol

Molecule: PFV INTEGRASE

3D Structure

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Related Domains

Browse other domains in SH3_11 →

Classification

AArchitecturebeta barrels(a.1)

XX-groupSH3(4)

HH-groupSH3(4.1)

TT-groupSH3(4.1.1)

FFamilySH3_11(4.1.1.100)

Ligands

in contact, ≤ 4 Å

HEXANE-1,6-DIOLHEZ
methyl 3-[5-azanyl-6-[[2,4-bis(fluoranyl)phenyl]methylcarbamoyl]-8-oxidanyl-7-oxidanylidene-1,8-naphthyridin-3-yl]propanoateOUY

+ 2 additives (Glycerol, Sulfate ion)

GlycerolGOL
Sulfate ionSO4

Pfam Families

Retroviral integrase C-terminal SH3 domain

ClanCL0010SH3

External Links

ECOD PDB View: 5MMB RCSB PDB: 5MMB PDBe: 5MMB UniProt: P14350

Downloads

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Shown in the structure viewer. Drug annotations from DrugDomain.