ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e5no1A2 - ECOD Domain | ECOD

ECOD/Domains/e5no1A2

e5no1A2

UID: 002097839

PDB

Range: A:313-375
PDB: 5NO1 chain A(all domains)
UniProt: P14350 (all domains)
Gene: pol

Molecule: Integrase

3D Structure

Loading viewer...

Related Domains

Browse other domains in SH3_11 →

Classification

AArchitecturebeta barrels(a.1)

XX-groupSH3(4)

HH-groupSH3(4.1)

TT-groupSH3(4.1.1)

FFamilySH3_11(4.1.1.100)

Ligands

in contact, ≤ 4 Å

Hexane-1,6-DiolHEZ
drugDrugBank DB02210

+ 2 additives (2-(N-morpholino)ethanesulfonic acid, Sulfate ion)

2-(N-morpholino)ethanesulfonic acidMES
DrugBank DB03814

Pfam Families

Retroviral integrase C-terminal SH3 domain

ClanCL0010SH3

External Links

ECOD PDB View: 5NO1 RCSB PDB: 5NO1 PDBe: 5NO1 UniProt: P14350

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Sulfate ionSO4

DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.